Medicine & Health

Run header-only checks on a DICOM series folder before conversion

Convert a CT DICOM series folder into a HU NIfTI volume with affine data

Generate synthetic CT volumes and masks with NV-Generate-CTMR rflow-ct

Generate synthetic body MRI volumes with NV-Generate-CTMR

Generate synthetic T1, T2, FLAIR, SWI and MRA brain MRI volumes

Run NV-Reason-CT inference on 3D chest and abdominal CT volumes

Run NV-Reason-CXR chest X-ray reasoning smoke tests

Run NV-Segment-CT VISTA3D on CT volumes and record label-map evidence

Run NV-Segment-CTMR on CT or MRI volumes and record label maps

Screen patients for six incurable conditions before committing treatment

Plan TCM treatment from observation, listening, questioning and pulse checks

Read organ health and prognosis from three pulse positions and eight qualities

Write medical research papers with IMRaD structure and reporting guidelines

Search ClinicalTrials.gov by condition, drug, location and phase

Look up ClinVar pathogenicity classes and evidence for human variants

Query openFDA for drug adverse events, recalls, labels and approvals

Search PubMed papers and trials and link them to genes and compounds

Inspect NIfTI volume headers and render slices with window presets

Look up ClinVar pathogenicity and review status to judge variant significance

Call HLA alleles from sequencing data with OptiType, HLA-HD or arcasHLA

Look up drug gene interactions and dosing guidelines in PharmGKB and CPIC

Calculate polygenic risk scores from GWAS summary statistics with LDpred2

Calculate tumor mutational burden from panel or exome data with clinical cutoffs

Prioritize candidate disease variants by pathogenicity, frequency and evidence

Detect tumor mutations in plasma DNA at low allele fractions using UMIs

Screen bacterial genomes for antimicrobial resistance genes with AMRFinderPlus

Type bacterial isolates with MLST and core genome MLST to track outbreak clones

Infer who infected whom in an outbreak from genomic and case data

Assign viral lineages with Nextclade and pangolin to track variants of concern

Analyze cfDNA fragment size patterns for cancer detection and tissue of origin

Rank neoantigens and epitopes by immunogenicity for vaccine candidate selection

Find tumor neoantigens from somatic mutations and patient HLA with pVACtools

Track ctDNA tumor fraction and mutation clearance over serial liquid biopsies

Detect antimicrobial resistance genes in isolates and metagenomes

Detect cancer from cfDNA methylation patterns and find tissue of origin

Stratify patients by fusing multi omics data into similarity networks

Estimate circulating tumor DNA fraction from shallow whole genome sequencing

Interpret variant pathogenicity with ClinVar and ACMG guidelines for diagnostics

Search PubMed, preprints, clinical trials and FDA drug labels in one query

Query cBioPortal for cancer mutations, copy number, expression and survival data

Search FDA drug labels for indications, dosing and safety information

Search DrugBank for drug mechanisms, interactions and safety data

Analyze outbreaks, risk factors and interventions through an epidemiology lens

Extract symptoms, medications, lab values and diagnoses from patient messages

Review prior authorization requests against coverage policy and medical necessity

Support speech therapy with phoneme analysis, articulation and fluency exercises

Detect drug safety signals in FDA FAERS reports with PRR, ROR and IC scores

Interpret somatic cancer mutations using CIViC, cBioPortal and therapy evidence

Find clinical practice guidelines from NICE, WHO, ADA and NCCN with citations