Biology & Genomics

Support target identification, virtual screening and ADMET prediction

Run a drug discovery pipeline from target to optimized lead compounds

Search ChEMBL compounds, DrugBank targets and FDA drug labels in plain language

Query the Ensembl genome API for genes, sequences, variants and orthologs

Analyze food composition, safety hazards and shelf life for product development

Query NCBI Gene for gene details, RefSeqs, GO terms and batch annotations

Analyze gene expression, BLAST alignments, GWAS results and genome assembly

Trace gene queries through expression analysis to pathway-level interpretation

Search and download NCBI GEO expression datasets for microarray and RNA-seq studies

Look up gnomAD allele frequencies and loss-of-function constraint scores

Map genes to KEGG pathways and convert IDs through the KEGG REST API

Query KEGG for metabolic pathways, compounds, drugs and gene-pathway links

Query NCBI for GenBank sequences, gene summaries, SNPs and literature links

Analyze fMRI and EEG brain imaging data and model neural circuits

Query Open Targets for gene-disease associations and drug evidence scores

Query the RCSB PDB for protein structure metadata and structure file downloads

Build and visualize phylogenetic trees with MAFFT, IQ-TREE and FastTree

Analyze protein 3D structures, homology models, AlphaFold output and docking

Query Reactome for pathway enrichment, gene-pathway mapping and interactions

Run single-cell RNA-seq QC, clustering, UMAP and differential expression

Preprocess single-cell RNA-seq data and annotate cell types with scanpy

Predict fitness effects of single amino-acid substitutions from labeled protein assays

Predict HIV inhibition and other molecular activity from SMILES strings

Query STRING for protein-protein interactions and enrichment across species

Search UniProt for protein sequences, FASTA files and ID mapping

Look up UniProt protein sequences, functions and cross-references